Three webservers so far that estimate ω (=Ka/Ks=dn/ds) taking into account the protein's tertiary structure (PDB ID):
- SELECTON by Tal Pupko's group at Tel Aviv University
- SWAKK by Laura Landweber's group at Princeton University
- Ka/Ks w/ 3D-windowing by David Liberles' group at the University of Wyoming
notes on evolutionary biology papers/programs and other stuff: a non-frequent approach